YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.94
Transmembrane Helix	26	46	0.93
Non-Cytoplasmic	47	67	0.93
Transmembrane Helix	68	91	0.92
Cytoplasmic	92	97	0.95
Transmembrane Helix	98	117	0.95
Non-Cytoplasmic	118	123	0.78
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	154	0.79
Transmembrane Helix	155	175	0.95
Non-Cytoplasmic	176	182	0.75
Transmembrane Helix	183	202	0.95
Cytoplasmic	203	257	0.96
Transmembrane Helix	258	278	0.92
Non-Cytoplasmic	279	292	0.87
Transmembrane Helix	293	314	0.92
Cytoplasmic	315	320	0.94
Transmembrane Helix	321	341	0.95
Non-Cytoplasmic	342	370	0.90
Transmembrane Helix	371	393	0.91
Cytoplasmic	394	403	0.82
Transmembrane Helix	404	423	0.94
Non-Cytoplasmic	424	438	0.86
Transmembrane Helix	439	460	0.93
Cytoplasmic	461	478	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPEDPQETQ PLLRSPGARA PGGRRVFLAT FAAALGPLSF GFALGYSSPA IPSLRRTAPP  60
   61 ALRLGDTAAS WFGAVVTLGA AAGGVLGGWL LDRAGRKLSL LLCTVPFVTG FAVITAARDV 120
  121 WMLLGGRLLT GLACGVASLV APVYISEIAY PAVRGLLGSC VQLMVVTGIL LAYVAGWVLE 180
  181 WRWLAVLGCV PPTLMLLLMC YMPETPRFLL TQHQYQEAMA ALRFLWGSEE GWEEPPVGAE 240
  241 HQGFQLAMLR RPGVHKPLII GICLMVFQQL SGVNAIMFYA NTIFEEAKFK DSSLASVTVG 300
  301 IIQVLFTAVA ALIMDRAGRK LLLALSGVIM VFSMSAFGTY FKLTQSGPSN SSHVGLLVPI 360
  361 SAEPADVHLG LAWLAVGSMC LFIAGFAVGW GPIPWLLMSE IFPLHIKGVA TGVCVLTNWF 420
  421 MAFLVTKEFN SIMEILRPYG AFWLTAAFCI LSVLFTLTFV PETKGRTLEQ ITAHFEGR