YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR3_SHEEP
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	26	0.89
Non-Cytoplasmic	27	61	0.94
Transmembrane Helix	62	85	0.90
Cytoplasmic	86	93	0.88
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	120	0.85
Transmembrane Helix	121	143	0.92
Cytoplasmic	144	153	0.85
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	183	0.76
Transmembrane Helix	184	206	0.89
Cytoplasmic	207	269	0.97
Transmembrane Helix	270	291	0.83
Non-Cytoplasmic	292	304	0.80
Transmembrane Helix	305	326	0.93
Cytoplasmic	327	333	0.87
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	360	0.85
Transmembrane Helix	361	387	0.80
Cytoplasmic	388	399	0.78
Transmembrane Helix	400	420	0.88
Non-Cytoplasmic	421	425	0.78
Transmembrane Helix	426	447	0.93
Cytoplasmic	448	494	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTKVTTPL IFAISIATIG SFQFGYNTGV INAPEAIIKD FLNYTLEERS ETPPSSVLLT  60
   61 SLWSLSVAIF SVGGMIGSFS VGLFVNRFGR RNSMLIVNLL AIAGGCLMGF CKIAESVEML 120
  121 ILGRLIIGLF CGLCTGFVPM YIGEISPTAL RGAFGTLNQL GIVIGILVAQ IFGLKVILGT 180
  181 EDLWPLLLGF TILPAIIQCA ALPFCPESPR FLLINRKEEE KAKEILQRLW GTEDVAQDIQ 240
  241 EMKDESMRMS QEKQVTVLEL FRAPNYRQPI IISIMLQLSQ QLSGINAVFY YSTGIFKDAG 300
  301 VQEPVYATIG AGVVNTIFTV VSVFLVERAG RRTLHLIGLG GMAFCSILMT ISLLLKDNYS 360
  361 WMSFICIGAI LVFVAFFEIG PGPIPWFIVA ELFGQGPRPA AMAVAGCSNW TSNFLVGLLF 420
  421 PSATFYLGAY VFIVFTVFLV IFWVFTFFKV PETRGRTFEE ITRAFEGQVQ TGTRGEKGPI 480
  481 MEMNSIQPTK DTNA