YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPT_CRILO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.48
Transmembrane Helix	10	32	0.87
Non-Cytoplasmic	33	58	0.50
Transmembrane Helix	59	83	0.84
Cytoplasmic	84	94	0.45
Transmembrane Helix	95	114	0.96
Non-Cytoplasmic	115	125	0.47
Transmembrane Helix	126	150	0.78
Cytoplasmic	151	164	0.44
Transmembrane Helix	165	188	0.83
Non-Cytoplasmic	189	192	0.41
Transmembrane Helix	193	213	0.74
Cytoplasmic	214	221	0.50
Transmembrane Helix	222	244	0.88
Non-Cytoplasmic	245	248	0.49
Transmembrane Helix	249	272	0.81
Cytoplasmic	273	378	0.78
Transmembrane Helix	379	399	0.84
Non-Cytoplasmic	400	408	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAFPELPLP LLVNLFGSLL GFVATVTLIP AFRSHFIAAR LCGQDLNKLS RQQIPESQGV  60
   61 ICGAVFLIIL FCFIPFPFLN CFVEEQCKAF PHHEFVALIG ALLAICCMIF LGFADDVLNL 120
  121 PWRHKLLLPT AASLPLLMVY FTNFGNTTIV VPKPFRWILG LHLDLGILYY VYMGLLAVFC 180
  181 TNAINILAGI NGLEAGQSLV ISASIIVFNL VELEGDYRDD HVFSLYFMIP FFFTTLGLLY 240
  241 HNWYPSQVFV GDTFCYFAGM TFAVVGILGH FSKTMLLFFI PQVFNFLYSL PQLLHAIPCP 300
  301 RHRIPRLNPK TGKLEMSYSK FKTKNLSFLG TFILKVAERL QLVTVHRGES EDGAFTECNN 360
  361 MTLINLLLKI FGPIHERNLT LLLLLLQILS SAVTFSIRYQ LVRLFYDV