YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNTU_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.71
Transmembrane Helix	5	22	0.84
Non-Cytoplasmic	23	27	0.71
Transmembrane Helix	28	47	0.91
Cytoplasmic	48	57	0.82
Transmembrane Helix	58	79	0.90
Non-Cytoplasmic	80	103	0.91
Transmembrane Helix	104	128	0.90
Cytoplasmic	129	139	0.81
Transmembrane Helix	140	161	0.88
Non-Cytoplasmic	162	176	0.79
Transmembrane Helix	177	198	0.94
Cytoplasmic	199	225	0.90
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	261	0.93
Transmembrane Helix	262	283	0.92
Cytoplasmic	284	294	0.93
Transmembrane Helix	295	316	0.87
Non-Cytoplasmic	317	327	0.72
Transmembrane Helix	328	349	0.86
Cytoplasmic	350	355	0.62
Transmembrane Helix	356	373	0.87
Non-Cytoplasmic	374	382	0.61
Transmembrane Helix	383	403	0.90
Cytoplasmic	404	422	0.73
Transmembrane Helix	423	445	0.89
Non-Cytoplasmic	446	446	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLTLVLTA VGSVLLLLFL VMKARMHAFL ALMVVSMGAG LFSGMPLDKI AATMEKGMGG  60
   61 TLGFLAVVVA LGAMFGKILH ETGAVDQIAV KMLKSFGHSR AHYAIGLAGL VCALPLFFEV 120
  121 AIVLLISVAF SMARHTGTNL VKLVIPLFAG VAAAAAFLVP GPAPMLLASQ MNADFGWMIL 180
  181 IGLCAAIPGM IIAGPLWGNF ISRYVELHIP DDISEPHLGE GKMPSFGFSL SLILLPLVLV 240
  241 GLKTIAARFV PEGSTAYEWF EFIGHPFTAI LVACLVAIYG LAMRQGMPKD KVMEICGHAL 300
  301 QPAGIILLVI GAGGVFKQVL VDSGVGPALG EALTGMGLPI AITCFVLAAA VRIIQGSATV 360
  361 ACLTAVGLVM PVIEQLNYSG AQMAALSICI AGGSIVVSHV NDAGFWLFGK FTGATEAETL 420
  421 KTWTMMETIL GTVGAIVGMI AFQLLS