YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNTT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.50
Transmembrane Helix	20	41	0.84
Non-Cytoplasmic	42	51	0.48
Transmembrane Helix	52	76	0.81
Cytoplasmic	77	95	0.54
Transmembrane Helix	96	114	0.80
Non-Cytoplasmic	115	115	0.21
Transmembrane Helix	116	130	0.58
Cytoplasmic	131	133	0.33
Transmembrane Helix	134	154	0.78
Non-Cytoplasmic	155	174	0.53
Transmembrane Helix	175	197	0.82
Cytoplasmic	198	220	0.74
Transmembrane Helix	221	242	0.86
Non-Cytoplasmic	243	257	0.74
Transmembrane Helix	258	279	0.88
Cytoplasmic	280	292	0.70
Transmembrane Helix	293	316	0.83
Non-Cytoplasmic	317	336	0.75
Transmembrane Helix	337	364	0.79
Cytoplasmic	365	367	0.49
Transmembrane Helix	368	393	0.75
Non-Cytoplasmic	394	415	0.73
Transmembrane Helix	416	437	0.90
Cytoplasmic	438	438	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLVIVAIGV ILLLLLMIRF KMNGFIALVL VALAVGLMQG MPLDKVIGSI KAGVGGTLGS  60
   61 LALIMGFGAM LGKMLADCGG AQRIATTLIA KFGKKHIQWA VVLTGFTVGF ALFYEVGFVL 120
  121 MLPLVFTIAA SANIPLLYVG VPMAAALSVT HGFLPPHPGP TAIATIFNAD MGKTLLYGTI 180
  181 LAIPTVILAG PVYARVLKGI DKPIPEGLYS AKTFSEEEMP SFGVSVWTSL VPVVLMAMRA 240
  241 IAEMILPKGH AFLPVAEFLG DPVMATLIAV LIAMFTFGLN RGRSMDQIND TLVSSIKIIA 300
  301 MMLLIIGGGG AFKQVLVDSG VDKYIASMMH ETNISPLLMA WSIAAVLRIA LGSATVAAIT 360
  361 AGGIAAPLIA TTGVSPELMV IAVGSGSVIF SHVNDPGFWL FKEYFNLTIG ETIKSWSMLE 420
  421 TIISVCGLVG CLLLNMVI