YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GARP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	32	0.89
Non-Cytoplasmic	33	52	0.77
Transmembrane Helix	53	76	0.78
Cytoplasmic	77	84	0.85
Transmembrane Helix	85	111	0.77
Non-Cytoplasmic	112	115	0.53
Transmembrane Helix	116	137	0.73
Cytoplasmic	138	150	0.79
Transmembrane Helix	151	173	0.83
Non-Cytoplasmic	174	179	0.73
Transmembrane Helix	180	199	0.96
Cytoplasmic	200	252	0.96
Transmembrane Helix	253	275	0.85
Non-Cytoplasmic	276	289	0.82
Transmembrane Helix	290	310	0.93
Cytoplasmic	311	321	0.80
Transmembrane Helix	322	341	0.92
Non-Cytoplasmic	342	348	0.73
Transmembrane Helix	349	371	0.91
Cytoplasmic	372	379	0.90
Transmembrane Helix	380	403	0.90
Non-Cytoplasmic	404	413	0.74
Transmembrane Helix	414	434	0.97
Cytoplasmic	435	444	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILDTVDEKK KGVHTRYLIL LIIFIVTAVN YADRATLSIA GTEVAKELQL SAVSMGYIFS  60
   61 AFGWAYLLMQ IPGGWLLDKF GSKKVYTYSL FFWSLFTFLQ GFVDMFPLAW AGISMFFMRF 120
  121 MLGFSEAPSF PANARIVAAW FPTKERGTAS AIFNSAQYFS LALFSPLLGW LTFAWGWEHV 180
  181 FTVMGVIGFV LTALWIKLIH NPTDHPRMSA EELKFISENG AVVDMDHKKP GSAAASGPKL 240
  241 HYIKQLLSNR MMLGVFFGQY FINTITWFFL TWFPIYLVQE KGMSILKVGL VASIPALCGF 300
  301 AGGVLGGVFS DYLIKRGLSL TLARKLPIVL GMLLASTIIL CNYTNNTTLV VMLMALAFFG 360
  361 KGFGALGWPV ISDTAPKEIV GLCGGVFNVF GNVASIVTPL VIGYLVSELH SFNAALVFVG 420
  421 CSALMAMVCY LFVVGDIKRM ELQK