YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GADC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	32	0.89
Non-Cytoplasmic	33	39	0.67
Transmembrane Helix	40	62	0.85
Cytoplasmic	63	86	0.85
Transmembrane Helix	87	112	0.79
Non-Cytoplasmic	113	127	0.73
Transmembrane Helix	128	149	0.89
Cytoplasmic	150	157	0.80
Transmembrane Helix	158	180	0.92
Non-Cytoplasmic	181	197	0.85
Transmembrane Helix	198	217	0.88
Cytoplasmic	218	235	0.73
Transmembrane Helix	236	260	0.90
Non-Cytoplasmic	261	291	0.83
Transmembrane Helix	292	311	0.92
Cytoplasmic	312	336	0.86
Transmembrane Helix	337	357	0.93
Non-Cytoplasmic	358	367	0.81
Transmembrane Helix	368	393	0.91
Cytoplasmic	394	409	0.96
Transmembrane Helix	410	432	0.90
Non-Cytoplasmic	433	444	0.89
Transmembrane Helix	445	466	0.92
Cytoplasmic	467	511	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSVQTGKA KQLTLLGFFA ITASMVMAVY EYPTFATSGF SLVFFLLLGG ILWFIPVGLC  60
   61 AAEMATVDGW EEGGVFAWVS NTLGPRWGFA AISFGYLQIA IGFIPMLYFV LGALSYILKW 120
  121 PALNEDPITK TIAALIILWA LALTQFGGTK YTARIAKVGF FAGILLPAFI LIALAAIYLH 180
  181 SGAPVAIEMD SKTFFPDFSK VGTLVVFVAF ILSYMGVEAS ATHVNEMSNP GRDYPLAMLL 240
  241 LMVAAICLSS VGGLSIAMVI PGNEINLSAG VMQTFTVLMS HVAPEIEWTV RVISALLLLG 300
  301 VLAEIASWIV GPSRGMYVTA QKNLLPAAFA KMNKNGVPVT LVISQLVITS IALIILTNTG 360
  361 GGNNMSFLIA LALTVVIYLC AYFMLFIGYI VLVLKHPDLK RTFNIPGGKG VKLVVAIVGL 420
  421 LTSIMAFIVS FLPPDNIQGD STDMYVELLV VSFLVVLALP FILYAVHDRK GKANTGVTLE 480
  481 PINSQNAPKG HFFLHPRARS PHYIVMNDKK H