YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUCP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	62	0.84
Transmembrane Helix	63	84	0.85
Cytoplasmic	85	91	0.78
Transmembrane Helix	92	112	0.92
Non-Cytoplasmic	113	118	0.81
Transmembrane Helix	119	142	0.87
Cytoplasmic	143	156	0.83
Transmembrane Helix	157	178	0.89
Non-Cytoplasmic	179	209	0.93
Transmembrane Helix	210	229	0.91
Cytoplasmic	230	261	0.90
Transmembrane Helix	262	282	0.94
Non-Cytoplasmic	283	293	0.82
Transmembrane Helix	294	315	0.88
Cytoplasmic	316	326	0.78
Transmembrane Helix	327	345	0.96
Non-Cytoplasmic	346	350	0.72
Transmembrane Helix	351	373	0.89
Cytoplasmic	374	381	0.90
Transmembrane Helix	382	403	0.91
Non-Cytoplasmic	404	410	0.77
Transmembrane Helix	411	431	0.91
Cytoplasmic	432	438	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTSIQTQS YRAVDKDAGQ SRSYIIPFAL LCSLFFLWAV ANNLNDILLP QFQQAFTLTN  60
   61 FQAGLIQSAF YFGYFIIPIP AGILMKKLSY KAGIITGLFL YALGAALFWP AAEIMNYTLF 120
  121 LVGLFIIAAG LGCLETAANP FVTVLGPESS GHFRLNLAQT FNSFGAIIAV VFGQSLILSN 180
  181 VPHQSQDVLD KMSPEQLSAY KHSLVLSVQT PYMIIVAIVL LVALLIMLTK FPALQSDNHS 240
  241 DAKQGSFSAS LSRLARIRHW RWAVLAQFCY VGAQTACWSY LIRYAVEEIP GMTAGFAANY 300
  301 LTGTMVCFFI GRFTGTWLIS RFAPHKVLAA YALIAMALCL ISAFAGGHVG LIALTLCSAF 360
  361 MSIQYPTIFS LGIKNLGQDT KYGSSFIVMT IIGGGIVTPV MGFVSDAAGN IPTAELIPAL 420
  421 CFAVIFIFAR FRSQTATN