YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7532831, gi\|2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	237	0.99
Transmembrane Helix	238	259	0.95
Cytoplasmic	260	269	0.92
Transmembrane Helix	270	291	0.89
Non-Cytoplasmic	292	321	0.93
Transmembrane Helix	322	344	0.89
Cytoplasmic	345	359	0.91
Transmembrane Helix	360	380	0.93
Non-Cytoplasmic	381	392	0.85
Transmembrane Helix	393	414	0.89
Cytoplasmic	415	442	0.95
Transmembrane Helix	443	462	0.96
Non-Cytoplasmic	463	489	0.92
Transmembrane Helix	490	510	0.93
Cytoplasmic	511	581	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAASILILH LTWAVATIAA NGAGHNGPVA SGAGPNGLQC QPIAVSACQG LGYNMTALPN  60
   61 LAGHTNQLEA ELQIAKLVPL IESGCSRRAR FLLCSSLFPL CTPDVPRPVA ACKLLCETVR 120
  121 GECMENAPPE LMELWPSFLN CDGLPQPEKH ELCMQIPQEV AVPGGSPSGP PTTGSPGVED 180
  181 HPQTYRFWKS GASPTSDLAG VLCPQNFSGS PFNPEECVPQ CQRDAFHTSS QKKTSETLIL 240
  241 GLSAVCFVLT LFALVTFWAE PTRFGYPERP VLFLCLCYNL FSVCYLERIV FHNQARMHDV 300
  301 ELQGRLMRPG CLLTPPCLAS YITTSYLSLC AASWWLIFAL CFYLSSHKKW SSEALEKRSG 360
  361 LFHVLAWVPP LAPPIAALLL EKVRPSELTG MCYAPGFVEL PALVLLLLGL YFTLRASRSL 420
  421 LSLQQQLQPT LAHHRFGQIR KRFVLFSLLY FAPTTAGVVA ALCERYADSV PSCSTPDDCL 480
  481 SPTPLSAWPA LVRIFFQLVG GTLTGLWVWS RKTCESYRNR LGASGTPTSS LMNQSKAAGA 540
  541 LPKKHLYTSG KSMLPTGGIT PLYAGISFHN VPVYNPNQSR V