YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTFC1_ECOLI, FRY...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.59
Transmembrane Helix	46	68	0.85
Non-Cytoplasmic	69	94	0.57
Transmembrane Helix	95	118	0.83
Cytoplasmic	119	125	0.41
Transmembrane Helix	126	144	0.62
Non-Cytoplasmic	145	159	0.77
Transmembrane Helix	160	180	0.91
Cytoplasmic	181	195	0.76
Transmembrane Helix	196	217	0.90
Non-Cytoplasmic	218	238	0.81
Transmembrane Helix	239	258	0.71
Cytoplasmic	259	276	0.51
Transmembrane Helix	277	297	0.89
Non-Cytoplasmic	298	316	0.59
Transmembrane Helix	317	335	0.71
Cytoplasmic	336	341	0.76
Transmembrane Helix	342	362	0.89
Non-Cytoplasmic	363	379	0.80
Transmembrane Helix	380	402	0.91
Cytoplasmic	403	415	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKKRSATV VPGASGAAAA VKNPQASKTS FWGELPQHVM SGISRMVPTL IMGGVILAFS  60
   61 QLIAYSWLKI PAEIGIMDAL NSGKFSGFDL SLLKFAWLSQ SFGGVLFGFA IPMFAAFVAN 120
  121 SIGGKLAFPA GFIGGLMSTQ PTQLLNFDPS TMQWATSSPV PSTFIGALII SIVAGYLVKW 180
  181 MNQKIQLPDF LLAFKTTFLL PILSAIFVML AMYYVITPFG GWINGGIRTV LTAAGEKGAL 240
  241 MYAMGIAAAT AIDLGGPINK AAGFVAFSFT TDHVLPVTAR SIAIVIPPIG LGLATIIDRR 300
  301 LTGKRLFNAQ LYPQGKTAMF LAFMGISEGA IPFALESPIT AIPSYMVGAI VGSTAAVWLG 360
  361 AVQWFPESAI WAWPLVTNLG VYMAGIALGA VITALMVVFL RLMMFRKGKL LIDSL