YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRLD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLATIGDN CVDIYPQLNK AFSGGNAVNV AVYCTRYGIQ PGCITWVGDD DYGTKLKQDL  60
   61 ARMGVDISHV HTKHGVTAQT QVELHDNDRV FGDYTEGVMA DFALSEEDYA WLAQYDIVHA 120
  121 AIWGHAEDAF PQLHAAGKLT AFDFSDKWDS PLWQTLVPHL DFAFASAPQE DETLRLKMKA 180
  181 IVARGAGTVI VTLGENGSIA WDGAQFWRQA PEPVTVIDTM GAGDSFIAGF LCGWSAGMTL 240
  241 PQAIAQGTAC AAKTIQYHGA W

Type	Start	End	Confidence
Cytoplasmic	1	180	0.58
Transmembrane Helix	181	200	0.49
Non-Cytoplasmic	201	261	0.59