YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FOCB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNKLSFDLQ LSARKAAIAE RIAAHKIARS KVSVFLMAMS AGVFMAIGFT FYLSVIADAP  60
   61 SSQALTHLVG GLCFTLGFIL LAVCGTSLFT SSVMTVMAKS RGVISWRTWL INALLVACGN 120
  121 LAGIACFSLL IWFSGLVMSE NAMWGVAVLH CAEGKMHHTF TESVSLGIMC NLMVCLALWM 180
  181 SYCGRSLCDK IVAMILPITL FVASGFEHCI ANLFVIPFAI AIRHFAPPPF WQLAHSSADN 240
  241 FPALTVSHFI TANLLPVMLG NIIGGAVLVS MCYRAIYLRQ EP

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	56	0.88
Non-Cytoplasmic	57	67	0.84
Transmembrane Helix	68	90	0.90
Cytoplasmic	91	108	0.82
Transmembrane Helix	109	134	0.91
Non-Cytoplasmic	135	163	0.91
Transmembrane Helix	164	183	0.94
Cytoplasmic	184	197	0.76
Transmembrane Helix	198	222	0.86
Non-Cytoplasmic	223	251	0.88
Transmembrane Helix	252	273	0.88
Cytoplasmic	274	282	0.77