YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLIR_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQVTSEQWL SWLNLYFWPL LRVLALISTA PILSERSVPK RVKLGLAMMI TFAIAPSLPA  60
   61 NDVPVFSFFA LWLAVQQILI GIALGFTMQF AFAAVRTAGE IIGLQMGLSF ATFVDPASHL 120
  121 NMPVLARIMD MLALLLFLTF NGHLWLISLL VDTFHTLPIG GEPLNSNAFL ALTKAGSLIF 180
  181 LNGLMLALPL ITLLLTLNLA LGLLNRMAPQ LSIFVIGFPL TLTVGISLMA ALMPLIAPFC 240
  241 EHLFSEIFNL LADIISELPL I

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.83
Transmembrane Helix	15	33	0.90
Cytoplasmic	34	41	0.83
Transmembrane Helix	42	60	0.88
Non-Cytoplasmic	61	67	0.66
Transmembrane Helix	68	93	0.76
Cytoplasmic	94	127	0.71
Transmembrane Helix	128	151	0.80
Non-Cytoplasmic	152	177	0.71
Transmembrane Helix	178	201	0.86
Cytoplasmic	202	212	0.66
Transmembrane Helix	213	237	0.88
Non-Cytoplasmic	238	261	0.79