YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FHUB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.57
Transmembrane Helix	7	28	0.57
Non-Cytoplasmic	29	61	0.89
Transmembrane Helix	62	82	0.92
Cytoplasmic	83	90	0.87
Transmembrane Helix	91	111	0.94
Non-Cytoplasmic	112	118	0.79
Transmembrane Helix	119	138	0.95
Cytoplasmic	139	145	0.84
Transmembrane Helix	146	168	0.93
Non-Cytoplasmic	169	193	0.92
Transmembrane Helix	194	214	0.86
Cytoplasmic	215	220	0.81
Transmembrane Helix	221	243	0.80
Non-Cytoplasmic	244	249	0.47
Transmembrane Helix	250	269	0.86
Cytoplasmic	270	276	0.78
Transmembrane Helix	277	296	0.92
Non-Cytoplasmic	297	304	0.74
Transmembrane Helix	305	326	0.89
Cytoplasmic	327	346	0.93
Transmembrane Helix	347	368	0.96
Non-Cytoplasmic	369	393	0.89
Transmembrane Helix	394	414	0.91
Cytoplasmic	415	423	0.81
Transmembrane Helix	424	442	0.96
Non-Cytoplasmic	443	448	0.73
Transmembrane Helix	449	470	0.90
Cytoplasmic	471	478	0.81
Transmembrane Helix	479	501	0.89
Non-Cytoplasmic	502	521	0.92
Transmembrane Helix	522	546	0.72
Cytoplasmic	547	556	0.58
Transmembrane Helix	557	576	0.67
Non-Cytoplasmic	577	577	0.23
Transmembrane Helix	578	598	0.71
Cytoplasmic	599	605	0.58
Transmembrane Helix	606	627	0.87
Non-Cytoplasmic	628	634	0.53
Transmembrane Helix	635	654	0.95
Cytoplasmic	655	660	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRIALFPA LLLALLVIVA TALTWMNFSQ ALPRSQWAQA AWSPDIDVIE QMIFHYSLLP  60
   61 RLAISLLVGA GLGLVGVLFQ QVLRNPLAEP TTLGVATGAQ LGITVTTLWA IPGAMASQFA 120
  121 AQAGACVVGL IVFGVAWGKR LSPVTLILAG LVVSLYCGAI NQLLVIFHHD QLQSMFLWST 180
  181 GTLTQTDWGG VERLWPQLLG GVMLTLLLLR PLTLMGLDDG VARNLGLALS LARLAALSLA 240
  241 IVISALLVNA VGIIGFIGLF APLLAKMLGA RRLLPRLMLA SLIGALILWL SDQIILWLTR 300
  301 VWMEVSTGSV TALIGAPLLL WLLPRLRSIS APDMKVNDRV AAERQHVLAF ALAGGVLLLM 360
  361 AVVVALSFGR DAHGWTWASG ALLEDLMPWR WPRIMAALFA GVMLAVAGCI IQRLTGNPMA 420
  421 SPEVLGISSG AAFGVVLMLF LVPGNAFGWL LPAGSLGAAV TLLIIMIAAG RGGFSPHRML 480
  481 LAGMALSTAF TMLLMMLQAS GDPRMAQVLT WISGSTYNAT DAQVWRTGIV MVILLAITPL 540
  541 CRRWLTILPL GGDTARAVGM ALTPTRIALL LLAACLTATA TMTIGPLSFV GLMAPHIARM 600
  601 MGFRRTMPHI VISALVGGLL LVFADWCGRM VLFPFQIPAG LLSTFIGAPY FIYLLRKQSR 660
  661