YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157423480, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	63	0.93
Transmembrane Helix	64	82	0.87
Cytoplasmic	83	89	0.71
Transmembrane Helix	90	111	0.85
Non-Cytoplasmic	112	127	0.82
Transmembrane Helix	128	146	0.85
Cytoplasmic	147	153	0.68
Transmembrane Helix	154	173	0.81
Non-Cytoplasmic	174	184	0.76
Transmembrane Helix	185	203	0.93
Cytoplasmic	204	216	0.79
Transmembrane Helix	217	236	0.92
Non-Cytoplasmic	237	252	0.84
Transmembrane Helix	253	273	0.91
Cytoplasmic	274	282	0.83
Transmembrane Helix	283	302	0.88
Non-Cytoplasmic	303	309	0.63
Transmembrane Helix	310	328	0.97
Cytoplasmic	329	345	0.86
Transmembrane Helix	346	370	0.83
Non-Cytoplasmic	371	396	0.91
Transmembrane Helix	397	418	0.91
Cytoplasmic	419	471	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKNTNIRIS LPAVCFVWQI AMIILFGVFI RYNEESDSHW IETRKKNNIS TDLENDFYYR  60
   61 YPSFQDVHVM IFVGFGFLMT FLKRYSFGSV GFNFPIAAFG IQWALLMQGW FHSFDKEDLK 120
  121 IKIGVENLIN ADFCVAGCLI AYGACLGKVS PVQLMVLTLF GVTLYAVEEY IILDLLHVRD 180
  181 AGGSMVIHTF GAYYGLTISW VLYRPFLSQS NHLQRSVYHS DVFAMIGTLF LWMFWPSFNS 240
  241 AIADHGDGQH RAAINTYLSL AASVLTTFAL SSLSKKYGKL DMVHIQNATL AGGVAMGTAS 300
  301 EFMITPYGSL IVGFCSGIVS TVGYVFLTPL MEKTLKIQDT CGVHNLHAMP GVIGGIVGAV 360
  361 TAACASESVY GHEGLINMFG FEGKVNRTAS VQGGYQAAGI FVAIAFGLVG GALVGGILKL 420
  421 PIWGDPTDSN CFDDDIYWEV PEEEDENIPA FGHQNMHRVE RTPDAHHRSH V