YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FEPD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.33
Transmembrane Helix	10	32	0.86
Cytoplasmic	33	63	0.42
Transmembrane Helix	64	85	0.89
Non-Cytoplasmic	86	92	0.56
Transmembrane Helix	93	114	0.93
Cytoplasmic	115	120	0.57
Transmembrane Helix	121	143	0.88
Non-Cytoplasmic	144	150	0.56
Transmembrane Helix	151	173	0.89
Cytoplasmic	174	192	0.64
Transmembrane Helix	193	214	0.90
Non-Cytoplasmic	215	238	0.63
Transmembrane Helix	239	264	0.89
Cytoplasmic	265	279	0.61
Transmembrane Helix	280	300	0.86
Non-Cytoplasmic	301	307	0.57
Transmembrane Helix	308	326	0.91
Cytoplasmic	327	334	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSVAVTRA IAVPGLLLLL IIATALSLLI GAKSLPASVV LEAFSGTCQS ADCTIVLDAR  60
   61 LPRTLAGLLA GGALGLAGAL MQTLTRNPLA DPGLLGVNAG ASFAIVLGAA LFGYSSAQEQ 120
  121 LAMAFAGALV ASLIVAFTGS QGGGQLSPVR LTLAGVALAA VLEGLTSGIA LLNPDVYDQL 180
  181 RFWQAGSLDI RNLHTLKVVL IPVLIAGATA LLLSRALNSL SLGSDTATAL GSRVARTQLI 240
  241 GLLAITVLCG SATAIVGPIA FIGLMMPHMA RWLVGADHRW SLPVTLLATP ALLLFADIIG 300
  301 RVIVPGELRV SVVSAFIGAP VLIFLVRRKT RGGA