YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FECC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.91
Transmembrane Helix	8	32	0.85
Non-Cytoplasmic	33	63	0.87
Transmembrane Helix	64	84	0.92
Cytoplasmic	85	93	0.73
Transmembrane Helix	94	112	0.92
Non-Cytoplasmic	113	120	0.62
Transmembrane Helix	121	143	0.88
Cytoplasmic	144	151	0.89
Transmembrane Helix	152	174	0.90
Non-Cytoplasmic	175	197	0.70
Transmembrane Helix	198	220	0.80
Cytoplasmic	221	239	0.57
Transmembrane Helix	240	267	0.84
Non-Cytoplasmic	268	281	0.53
Transmembrane Helix	282	306	0.59
Cytoplasmic	307	307	0.23
Transmembrane Helix	308	328	0.88
Non-Cytoplasmic	329	332	0.22

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIKHPVLL WGLPVAALII IFWLSLFCYS AIPVSGADAT RALLPGHTPT LPEALVQNLR  60
   61 LPRSLVAVLI GASLALAGTL LQTLTHNPMA SPSLLGINSG AALAMALTSA LSPTPIAGYS 120
  121 LSFIAACGGG VSWLLVMTAG GGFRHTHDRN KLILAGIALS AFCMGLTRIT LLLAEDHAYG 180
  181 IFYWLAGGVS HARWQDVWQL LPVVVTAVPV VLLLANQLNL LNLSDSTAHT LGVNLTRLRL 240
  241 VINMLVLLLV GACVSVAGPV AFIGLLVPHL ARFWAGFDQR NVLPVSMLLG ATLMLLADVL 300
  301 ARALAFPGDL PAGAVLALIG SPCFVWLVRR RG