YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EPHA3_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFRIYSFL APFHILVLCQ ALRNYPDNEV TLLDSMSAPG DLGWEAYPSE GWEEISVMDE  60
   61 RNIPMRTYQV CNVMEANQNN WLRTGLIQRE GAQRVYVEIK FTLRDCNSLP GVPGTCKETF 120
  121 NVYYHESNNA VAAPLRHIRE SQYIKIDTIA ADESFTQTDV GDRVMKLNTE VRDISGLSKR 180
  181 GLYLAFQDLG ACIALVSVRV FYKRCPLAVL NLARFPDTVT GGDSALVEVR GTCVEDAEEL 240
  241 EGPRMFCSAD GGWLVPIGRC VCRPGFEEVD GHCQPCRSGF YKASAMDAYC VKCPPHSYSH 300
  301 QDKASECVCE RGFYRAESDP RSMACTRPPS APGNPISMVN ETAVTLEWSP PRDSGGRGDV 360
  361 SYSVHCRKCS GETGASERCV PCGSGAHFNP RQFGLTHPRV LVTELQPHTN YTFSVEALNG 420
  421 VSDLSPSPRQ LVSVNVTTSQ TVSVILKERK GTDSVTLAWQ GPEPVDGTVV EYEVTYYEKN 480
  481 QQDQNYTVLK TKSNSMTVDG LKPGTTYIFR VRARTDGGYG NYKGEIELET SHEDMLAVGD 540
  541 PNQQTILAIS VAGGAVLLVL LVACFIVSGR RCGYIKAKQD PEEEKMQFQH GRVKLPETRT 600
  601 YIHPHTYEDP NQAVRDFAKE IEVSNIRIER VIGAGEFGEV CSGRLRLPSK REIQVAIKSL 660
  661 KAGYSEHQRR DFLSEASIMG QFDHPNIIRL EGVVTRCKPV MIVTEYMENG SLDTFLKKHD 720
  721 GQFTVIQLLG MLRGIAAGMQ YLSEMNYVHR DLAARNILVN RNLVCKVSDF GLSRVLEDDP 780
  781 EAAYTTRGGK IPIRWTAPEA ITYRKFTSAS DVWSYGIVMW EVISYGERPY WEMSNQDVIK 840
  841 AVDEGYRLPA PMDCPVVLHQ LMLDCWEKNR SDRPKFGQIV NTLDRLIRNP SSLKQLANSA 900
  901 VWEDPVTPEA AVNTVEDWLD LIKMGQYKEH FSSAGYVTLD SVLYVSSSEL DKMGVELAGH 960
  961 QKKILSSIQC LQAHHGTQVQ V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle