YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECFE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFLWDLAS FIVALGVLIT VHEFGHFWVA RRCGVRVERF SIGFGKALWR RTDKLGTEYV  60
   61 IALIPLGGYV KMLDERAEPV VPELRHHAFN NKSVGQRAAI IAAGPVANFI FAIFAYWLVF 120
  121 IIGVPGVRPV VGEIAANSIA AEAQIAPGTE LKAVDGIETP DWDAVRLQLV DKIGDESTTI 180
  181 TVAPFGSDQR RDVKLDLRHW AFEPDKEDPV SSLGIRPRGP QIEPVLENVQ PNSAASKAGL 240
  241 QAGDRIVKVD GQPLTQWVTF VMLVRDNPGK SLALEIERQG SPLSLTLIPE SKPGNGKAIG 300
  301 FVGIEPKVIP LPDEYKVVRQ YGPFNAIVEA TDKTWQLMKL TVSMLGKLIT GDVKLNNLSG 360
  361 PISIAKGAGM TAELGVVYYL PFLALISVNL GIINLFPLPV LDGGHLLFLA IEKIKGGPVS 420
  421 ERVQDFCYRI GSILLVLLMG LALFNDFSRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.73
Transmembrane Helix	8	30	0.88
Cytoplasmic	31	54	0.75
Transmembrane Helix	55	73	0.51
Non-Cytoplasmic	74	97	0.74
Transmembrane Helix	98	120	0.84
Cytoplasmic	121	375	0.82
Transmembrane Helix	376	398	0.82
Non-Cytoplasmic	399	425	0.72
Transmembrane Helix	426	447	0.89
Cytoplasmic	448	450	0.66