YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EAMA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	27	0.94
Non-Cytoplasmic	28	32	0.84
Transmembrane Helix	33	52	0.92
Cytoplasmic	53	59	0.85
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	86	0.68
Transmembrane Helix	87	108	0.89
Cytoplasmic	109	115	0.76
Transmembrane Helix	116	132	0.94
Non-Cytoplasmic	133	139	0.73
Transmembrane Helix	140	161	0.92
Cytoplasmic	162	173	0.89
Transmembrane Helix	174	196	0.89
Non-Cytoplasmic	197	212	0.82
Transmembrane Helix	213	233	0.92
Cytoplasmic	234	243	0.73
Transmembrane Helix	244	263	0.95
Non-Cytoplasmic	264	268	0.87
Transmembrane Helix	269	289	0.93
Cytoplasmic	290	299	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKDGVLAL LVVVVWGLNF VVIKVGLHNM PPLMLAGLRF MLVAFPAIFF VARPKVPLNL  60
   61 LLGYGLTISF AQFAFLFCAI NFGMPAGLAS LVLQAQAFFT IMLGAFTFGE RLHGKQLAGI 120
  121 ALAIFGVLVL IEDSLNGQHV AMLGFMLTLA AAFSWACGNI FNKKIMSHST RPAVMSLVIW 180
  181 SALIPIIPFF VASLILDGSA TMIHSLVTID MTTILSLMYL AFVATIVGYG IWGTLLGRYE 240
  241 TWRVAPLSLL VPVVGLASAA LLLDERLTGL QFLGAVLIMT GLYINVFGLR WRKAVKVGS