YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lin-3
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGKSIPERL LVAFESCLPS WFRQERSAPE QLQSAENAAE NSGSVPPDTS RNSLETNEIG  60
   61 DAPSSTSTPE TPTETTISEA GDDEKRTEEV AKELIEKEAE YEGEYEDEKV DEEVEEALKY 120
  121 NEDATQDATS TLKPAVRKEI EKLKEAKCKD YCHHNATCHV EVIFREDRVS AVVPSCHCPQ 180
  181 GWEGTRCDRH YVQAFYAPIN GRYNVRLSTM SSTAQLLVQQ SSTSAIPAFA FLIVMLIMFI 240
  241 TIVVYAYRRM SKRSDDMTYT MSHMCPPEAF NVLKTPNGRH IPVHQIPSCS YTIPTPGTVP 300
  301 PNISSTPGSR IPTRQQAIRN NEQARNNFFS ILRSQGTIPS RSINDDDTPK HYKSVPRVEV 360
  361 SAINYSGHID FSTVSYQSTE SEVSKASVTC PPPAHTVINI ELDSADTNFR SPSRSSGEQG 420
  421 SPATCEPMIR HT

Type	Start	End	Confidence
Non-Cytoplasmic	1	224	0.98
Transmembrane Helix	225	247	0.93
Cytoplasmic	248	432	0.98