YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCTA2_PSEAE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQPFYKSL YVQVLVAIAI GIALGHWYPE TAVAMKPFGD GFVKLIKMAI APIIFCTVVT  60
   61 GIAGMQSMKS VGKTGGMALL YFEVVSTVAL IIGLVVVNVV QPGAGMHVDP NTLDTSKIAA 120
  121 YAAAGEKQST VDFLMNVIPG TVVGAFANGD ILQVLFFSVL FGYALHRLGS YGKPVFEFIE 180
  181 RVSHVMFNII NVIMKVAPIG AFGAMAFTIG AYGVGSLVQL GQLMLCFYIT CILFVLIVLG 240
  241 GIARAHGFSI LRFIRYIREE LLIVLGTSSS ESALPRMIDK MEKLGCNKSV VGLVIPTGYS 300
  301 FNLDGTSIYL TMAAVFIAQA TDTPMDITHQ ITLLLVLLIA SKGAAGVTGS GFIVLAATLS 360
  361 AVGHLPVAGL ALILGIDRFM SEARALTNLV GNGVATVVVS KWCKQLDEGT LQRELAGEGN 420
  421 ASSPASDIPV GGREAV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	44	0.92
Transmembrane Helix	45	65	0.91
Cytoplasmic	66	77	0.81
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	142	0.96
Transmembrane Helix	143	165	0.84
Cytoplasmic	166	190	0.81
Transmembrane Helix	191	212	0.87
Non-Cytoplasmic	213	223	0.76
Transmembrane Helix	224	248	0.87
Cytoplasmic	249	326	0.74
Transmembrane Helix	327	346	0.63
Non-Cytoplasmic	347	351	0.50
Transmembrane Helix	352	376	0.84
Cytoplasmic	377	436	0.82