YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSDX_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.75
Transmembrane Helix	5	23	0.93
Cytoplasmic	24	29	0.64
Transmembrane Helix	30	49	0.91
Non-Cytoplasmic	50	57	0.62
Transmembrane Helix	58	77	0.94
Cytoplasmic	78	97	0.74
Transmembrane Helix	98	126	0.82
Non-Cytoplasmic	127	139	0.66
Transmembrane Helix	140	159	0.86
Cytoplasmic	160	176	0.58
Transmembrane Helix	177	198	0.90
Non-Cytoplasmic	199	226	0.73
Transmembrane Helix	227	248	0.86
Cytoplasmic	249	258	0.73
Transmembrane Helix	259	283	0.87
Non-Cytoplasmic	284	301	0.75
Transmembrane Helix	302	322	0.94
Cytoplasmic	323	342	0.74
Transmembrane Helix	343	367	0.90
Non-Cytoplasmic	368	384	0.67
Transmembrane Helix	385	408	0.91
Cytoplasmic	409	421	0.75
Transmembrane Helix	422	444	0.90
Non-Cytoplasmic	445	445	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSQIWVVST LLISIVLIVL TIVKFKFHPF LALLLASFFV GTMMGMGPLD MVNAIESGIG  60
   61 GTLGFLAAVI GLGTILGKMM EVSGAAERIG LTLQRCRWLS VDVIMVLVGL ICGITLFVEV 120
  121 GVVLLIPLAF SIAKKTNTSL LKLAIPLCTA LMAVHCVVPP HPAALYVANK LGADIGSVIV 180
  181 YGLLVGLMAS LIGGPLFLKF LGQRLPFKPV PTEFADLKVR DEKTLPSLGA TLFTILLPIA 240
  241 LMLVKTIAEL NMARESGLYI LVEFIGNPIT AMFIAVFVAY YVLGIRQHMS MGTMLTHTEN 300
  301 GFGSIANILL IIGAGGAFNA ILKSSSLADT LAVILSNMHM HPILLAWLVA LILHAAVGSA 360
  361 TVAMMGATAI VAPMLPLYPD ISPEIIAIAI GSGAIGCTIV TDSLFWLVKQ YCGATLNETF 420
  421 KYYTTATFIA SVVALAGTFL LSFII