YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBD_VIBPA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	214	0.99
Transmembrane Helix	215	237	0.88
Cytoplasmic	238	256	0.77
Transmembrane Helix	257	278	0.90
Non-Cytoplasmic	279	288	0.83
Transmembrane Helix	289	311	0.92
Cytoplasmic	312	333	0.87
Transmembrane Helix	334	355	0.92
Non-Cytoplasmic	356	372	0.78
Transmembrane Helix	373	393	0.95
Cytoplasmic	394	406	0.81
Transmembrane Helix	407	423	0.95
Non-Cytoplasmic	424	431	0.67
Transmembrane Helix	432	450	0.94
Cytoplasmic	451	461	0.83
Transmembrane Helix	462	484	0.86
Non-Cytoplasmic	485	613	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLSVLLL GLITFSTPSL ALFGKDQFNN SQNNSFGSSN DSFVPVDQAF PFNFYQQDDK  60
   61 LMLDWQVRDG YYLYQERLSV SGENISLGEL QMENGTPHKD EFFGDVHIYT TPLFVNVPLD 120
  121 EWQEGARVIV QYQGCAKAGF CYPPETRIIP IDAFTASIAD SAVATKPTQS TANNNQTNAT 180
  181 SPTASTSVSS NNTPAPVTEQ DSLAANLADN WWTPLLFLAL GVGLAFTPCV LPMYPILTSI 240
  241 VLGSGKLSQR RALGLSLVYV QGMALTYTLL GLVVASAGMQ FQAAMQHPYV LIGLSILFVT 300
  301 LALSMFGVYT LQLPSSVQTW LNNLSNKQQG GSSAGVFAMG AISGLVCSPC TTAPLSGALL 360
  361 YVAQSGDLLT GGIALYALAM GMGIPLILVA VFGNKLLPKA GGWMDRVKTL FGFILLAAPI 420
  421 FLLERILPEM WSTALWSALG IAAFGWLYHI KNSLEFGGWK QSAIGIIAVL GLFASAQPAL 480
  481 NYWFGNHETQ AQQTTVSFTR IANVAELEEQ LALAKAAGKP VMLDFYADWC VACKEFEKYT 540
  541 FHDPKVEAKL QDFVLLQADV TKNQVQDIEL LKHMNVLGLP TIEFWDAKGE HVSNARLTGF 600
  601 MQAEPFLEHI NRF