YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DIV_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQPISGPPP GQPPGQGDNL PSGTGNQPLS SQQRTSLESL MTKVTSLTQQ QRAELWAGIR  60
   61 HDIGLSGDSP LLSRHFPAAE HNLAQRLLAA QKSHSARQLL AQLGEYLRLG NNRQAVTDYI 120
  121 RHNFGQTPLN QLSPEQLKTI LTLLQEGKMV IPQPQQREAT DRPLLPAEHN ALKQLVTKLA 180
  181 AATGEPSKQI WQSMLELSGV KDGELIPAKL FNHLVTWLQA RQTLSQQNTP TLESLQMTLK 240
  241 QPLDASELAA LSAYIQQKYG LSAQSSLSSA QAEDILNQLY QRRVKGIDPR VMQPLLNPFP 300
  301 PMMDTLQNMA TRPALWILLV AIILMLVWLV R

Type	Start	End	Confidence
Non-Cytoplasmic	1	308	0.74
Transmembrane Helix	309	330	0.90
Cytoplasmic	331	331	0.74