YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DINF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.49
Transmembrane Helix	5	23	0.55
Cytoplasmic	24	31	0.65
Transmembrane Helix	32	54	0.80
Non-Cytoplasmic	55	60	0.85
Transmembrane Helix	61	83	0.90
Cytoplasmic	84	105	0.86
Transmembrane Helix	106	129	0.85
Non-Cytoplasmic	130	151	0.91
Transmembrane Helix	152	173	0.89
Cytoplasmic	174	179	0.83
Transmembrane Helix	180	200	0.91
Non-Cytoplasmic	201	206	0.81
Transmembrane Helix	207	227	0.93
Cytoplasmic	228	258	0.94
Transmembrane Helix	259	278	0.93
Non-Cytoplasmic	279	284	0.71
Transmembrane Helix	285	307	0.85
Cytoplasmic	308	336	0.86
Transmembrane Helix	337	357	0.88
Non-Cytoplasmic	358	370	0.86
Transmembrane Helix	371	393	0.89
Cytoplasmic	394	402	0.81
Transmembrane Helix	403	422	0.90
Non-Cytoplasmic	423	426	0.78
Transmembrane Helix	427	446	0.94
Cytoplasmic	447	459	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGVAVCFS SLFIRLVCMA FLTSSDKALW HLALPMIFSN ITVPLLGLVD TAVIGHLDSP  60
   61 VYLGGVAVGA TATSFLFMLL LFLRMSTTGL TAQAYGAKNP QALARTLVQP LLLALGAGAL 120
  121 IALLRTPIID LALHIVGGSE AVLEQARRFL EIRWLSAPAS LANLVLLGWL LGVQYARAPV 180
  181 ILLVVGNILN IVLDVWLVMG LHMNVQGAAL ATVIAEYATL LIGLLMVRKI LKLRGISGEM 240
  241 LKTAWRGNFR RLLALNRDIM LRSLLLQLCF GAITVLGARL GSDIIAVNAV LMTLLTFTAY 300
  301 ALDGFAYAVE AHSGQAYGAR DGSQLLDVWR AACRQSGIVA LLFSVVYLLA GEHIIALLTS 360
  361 LTQIQQLADR YLIWQVILPV VGVWCYLLDG MFIGATRATE MRNSMAVAAA GFALTLLTLP 420
  421 WLGNHALWLA LTVFLALRGL SLAAIWRRHW RNGTWFAAT