YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGOT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.88
Transmembrane Helix	15	35	0.88
Non-Cytoplasmic	36	52	0.77
Transmembrane Helix	53	75	0.81
Cytoplasmic	76	81	0.72
Transmembrane Helix	82	101	0.90
Non-Cytoplasmic	102	106	0.59
Transmembrane Helix	107	126	0.74
Cytoplasmic	127	140	0.82
Transmembrane Helix	141	162	0.89
Non-Cytoplasmic	163	168	0.81
Transmembrane Helix	169	191	0.89
Cytoplasmic	192	241	0.98
Transmembrane Helix	242	263	0.91
Non-Cytoplasmic	264	279	0.87
Transmembrane Helix	280	300	0.90
Cytoplasmic	301	311	0.79
Transmembrane Helix	312	333	0.89
Non-Cytoplasmic	334	339	0.79
Transmembrane Helix	340	361	0.93
Cytoplasmic	362	369	0.84
Transmembrane Helix	370	393	0.88
Non-Cytoplasmic	394	402	0.71
Transmembrane Helix	403	423	0.95
Cytoplasmic	424	430	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIPVNAAKP GRRRYLTLVM IFITVVICYV DRANLAVASA HIQEEFGITK AEMGYVFSAF  60
   61 AWLYTLCQIP GGWFLDRVGS RVTYFIAIFG WSVATLFQGF ATGLMSLIGL RAITGIFEAP 120
  121 AFPTNNRMVT SWFPEHERAS AVGFYTSGQF VGLAFLTPLL IWIQEMLSWH WVFIVTGGIG 180
  181 IIWSLIWFKV YQPPRLTKGI SKAELDYIRD GGGLVDGDAP VKKEARQPLT AKDWKLVFHR 240
  241 KLIGVYLGQF AVASTLWFFL TWFPNYLTQE KGITALKAGF MTTVPFLAAF VGVLLSGWVA 300
  301 DLLVRKGFSL GFARKTPIIC GLLISTCIMG ANYTNDPMMI MCLMALAFFG NGFASITWSL 360
  361 VSSLAPMRLI GLTGGVFNFA GGLGGITVPL VVGYLAQGYG FAPALVYISA VALIGALSYI 420
  421 LLVGDVKRVG