YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCUD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.49
Transmembrane Helix	4	19	0.52
Cytoplasmic	20	25	0.76
Transmembrane Helix	26	48	0.90
Non-Cytoplasmic	49	67	0.91
Transmembrane Helix	68	90	0.87
Cytoplasmic	91	109	0.87
Transmembrane Helix	110	131	0.83
Non-Cytoplasmic	132	135	0.56
Transmembrane Helix	136	160	0.76
Cytoplasmic	161	161	0.52
Transmembrane Helix	162	186	0.65
Non-Cytoplasmic	187	192	0.64
Transmembrane Helix	193	215	0.87
Cytoplasmic	216	241	0.83
Transmembrane Helix	242	264	0.91
Non-Cytoplasmic	265	270	0.73
Transmembrane Helix	271	290	0.94
Cytoplasmic	291	310	0.77
Transmembrane Helix	311	327	0.59
Non-Cytoplasmic	328	346	0.44
Transmembrane Helix	347	369	0.91
Cytoplasmic	370	377	0.40
Transmembrane Helix	378	402	0.78
Non-Cytoplasmic	403	405	0.40
Transmembrane Helix	406	430	0.79
Cytoplasmic	431	434	0.43
Transmembrane Helix	435	454	0.83
Non-Cytoplasmic	455	455	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIIISVIV LITMGYLILK NYKPQVVLAA AGIFLMMCGV WLGFGGVLDP TKSSGYLIVD  60
   61 IYNEILRMLS NRIAGLGLSI MAVGGYARYM ERIGASRAMV SLLSRPLKLI RSPYIILSAT 120
  121 YVIGQIMAQF ITSASGLGML LMVTLFPTLV SLGVSRLSAV AVIATTMSIE WGILETNSIF 180
  181 AAQVAGMKIA TYFFHYQLPV ASCVIISVAI SHFFVQRAFD KKDKNINHEQ AEQKALDNVP 240
  241 PLYYAILPVM PLILMLGSLF LAHVGLMQSE LHLVVVMLLS LTVTMFVEFF RKHNLRETMD 300
  301 DVQAFFDGMG TQFANVVTLV VAGEIFAKGL TTIGTVDAVI RGAEHSGLGG IGVMIIMALV 360
  361 IAICAIVMGS GNAPFMSFAS LIPNIAAGLH VPAVVMIMPM HFATTLARAV SPITAVVVVT 420
  421 SGIAGVSPFA VVKRTAIPMA VGFVVNMIAT ITLFY