YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCUC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	22	0.72
Non-Cytoplasmic	23	27	0.48
Transmembrane Helix	28	50	0.86
Cytoplasmic	51	75	0.63
Transmembrane Helix	76	98	0.83
Non-Cytoplasmic	99	119	0.65
Transmembrane Helix	120	146	0.87
Cytoplasmic	147	154	0.54
Transmembrane Helix	155	178	0.79
Non-Cytoplasmic	179	195	0.68
Transmembrane Helix	196	218	0.90
Cytoplasmic	219	237	0.74
Transmembrane Helix	238	260	0.89
Non-Cytoplasmic	261	267	0.68
Transmembrane Helix	268	288	0.94
Cytoplasmic	289	308	0.67
Transmembrane Helix	309	333	0.81
Non-Cytoplasmic	334	338	0.53
Transmembrane Helix	339	364	0.80
Cytoplasmic	365	381	0.49
Transmembrane Helix	382	396	0.31
Non-Cytoplasmic	397	402	0.48
Transmembrane Helix	403	426	0.70
Cytoplasmic	427	433	0.66
Transmembrane Helix	434	457	0.86
Non-Cytoplasmic	458	461	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFIELLIG VVVIVGVARY IIKGYSATGV LFVGGLLLLI ISAIMGHKVL PSSQASTGYS  60
   61 ATDIVEYVKI LLMSRGGDLG MMIMMLCGFA AYMTHIGAND MVVKLASKPL QYINSPYLLM 120
  121 IAAYFVACLM SLAVSSATGL GVLLMATLFP VMVNVGISRG AAAAICASPA AIILAPTSGD 180
  181 VVLAAQASEM SLIDFAFKTT LPISIAAIIG MAIAHFFWQR YLDKKEHISH EMLDVSEITT 240
  241 TAPAFYAILP FTPIIGVLIF DGKWGPQLHI ITILVICMLI ASILEFLRSF NTQKVFSGLE 300
  301 VAYRGMADAF ANVVMLLVAA GVFAQGLSTI GFIQSLISIA TSFGSASIIL MLVLVILTML 360
  361 AAVTTGSGNA PFYAFVEMIP KLAHSSGINP AYLTIPMLQA SNLGRTLSPV SGVVVAVAGM 420
  421 AKISPFEVVK RTSVPVLVGL VIVIVATELM VPGTAAAVTG K