YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCTA_PSESM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTTPLRKTA MTTRQPIYKS LYFQVIVAIV IGILIGHFYP ETGKALKPLG DGFIKLIKMV  60
   61 IAPIIFCTVV SGIAGMQNMK SVGKTGGYAL LYFEIVSTIA LLIGLIVVNV VQPGAGMNID 120
  121 VSTLDASKIA AYVTAGKDQS IVGFILNVIP NTIVGAFANG DILQVLMFSV IFGFALHRLG 180
  181 SYGKPVLDFI DRFAHVMFNI INMIMKLAPI GAFGAMAFTI GAYGVSSLVQ LGQLMICFYI 240
  241 TCVLFVVLVL GSICRAHGFS IFKLVRYIRE ELLIVLGTSS SESALPRMLI KMERLGAQKS 300
  301 VVGLVIPTGY SFNLDGTSIY LTMAAVFIAQ ATNTHMDITH QITLLLVLLL SSKGAAGVTG 360
  361 SGFIVLAATL SAVGHLPVAG LALILGIDRF MSEARALTNL VGNAVATVVV AKWVGELDTD 420
  421 KLQSELASGG SAILETRPED DLGVAEGPTP ANAVNTTKTV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	39	0.98
Non-Cytoplasmic	40	55	0.90
Transmembrane Helix	56	76	0.92
Cytoplasmic	77	87	0.84
Transmembrane Helix	88	108	0.93
Non-Cytoplasmic	109	159	0.89
Transmembrane Helix	160	180	0.84
Cytoplasmic	181	201	0.85
Transmembrane Helix	202	223	0.87
Non-Cytoplasmic	224	234	0.71
Transmembrane Helix	235	256	0.91
Cytoplasmic	257	300	0.80
Transmembrane Helix	301	331	0.49
Non-Cytoplasmic	332	362	0.40
Transmembrane Helix	363	387	0.85
Cytoplasmic	388	460	0.70