YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	D2R-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLENFNDY FPNYNGSTVS GTSTIAPGVA ITGSRGSGLL LEQNLTGLYL DGYRLNCTNE  60
   61 TLNLTDSCGE LRVVDHNYWA LILILFPILT LFGNILVILS VCRERSLQTV TNYFIVSLAI 120
  121 ADLLVAVVVM PFAVYFLVNG AWALPDVVCD FYIAMDVICS TSSIFNLVAI SIDRYIAVTQ 180
  181 PIKYAKHKNS RRVCLTILLV WAISAAIGSP IVLGLNNTPN REPDVCAFYN ADFILYSSLS 240
  241 SFYIPCIIMV FLYWNIFKAL RSRARKQRAA RKPHLSELTG GSVIENIAQT RRLAETALDS 300
  301 SRHASRILPD EAATNTASGS NEEEDENAIS PDIDDCHVIV NDKSTEFMLA TVVEETGNVA 360
  361 MKPLSFVRYG VQEAMTLARN DSTLSTTSKT SSRKDKKNSQ ASRFTIYKVH KASKKKREKS 420
  421 SAKKERKATK TLAIVLGVFL FCWLPFFSCN IMDAMCAKFK KDCRPGLTAY MMTTWLGYIN 480
  481 SFVNPVIYTI FNPEFRKAFK KIMHMG

Type	Start	End	Confidence
Cytoplasmic	1	10	0.67
Transmembrane Helix	11	31	0.58
Non-Cytoplasmic	32	78	0.93
Transmembrane Helix	79	102	0.90
Cytoplasmic	103	112	0.86
Transmembrane Helix	113	135	0.92
Non-Cytoplasmic	136	151	0.84
Transmembrane Helix	152	172	0.93
Cytoplasmic	173	192	0.89
Transmembrane Helix	193	214	0.94
Non-Cytoplasmic	215	233	0.95
Transmembrane Helix	234	257	0.89
Cytoplasmic	258	427	0.99
Transmembrane Helix	428	447	0.91
Non-Cytoplasmic	448	473	0.84
Transmembrane Helix	474	492	0.92
Cytoplasmic	493	506	0.92