YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYOC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDTLTHAT AHAHEHGHHD AGGTKIFGFW IYLMSDCILF SILFATYAVL VNGTAGGPTG  60
   61 KDIFELPFVL VETFLLLFSS ITYGMAAIAM YKNNKSQVIS WLALTWLFGA GFIGMEIYEF 120
  121 HHLIVNGMGP DRSGFLSAFF ALVGTHGLHV TSGLIWMAVL MVQIARRGLT STNRTRIMCL 180
  181 SLFWHFLDVV WICVFTVVYL MGAM

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	50	0.91
Non-Cytoplasmic	51	67	0.88
Transmembrane Helix	68	89	0.90
Cytoplasmic	90	97	0.85
Transmembrane Helix	98	118	0.91
Non-Cytoplasmic	119	137	0.85
Transmembrane Helix	138	160	0.89
Cytoplasmic	161	180	0.85
Transmembrane Helix	181	203	0.91
Non-Cytoplasmic	204	204	0.99