YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYDD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSRQKELT RWLKQQSVIS QRWLNISRLL GFVSGILIIA QAWFMARILQ HMIMENIPRE  60
   61 ALLLPFTLLV LTFVLRAWVV WLRERVGYHA GQHIRFAIRR QVLDRLQQAG PAWIQGKPAG 120
  121 SWATLVLEQI DDMHDYYARY LPQMALAVSV PLLIVVAIFP SNWAAALILL GTAPLIPLFM 180
  181 ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAEIESIRS ASEDFRQRTM 240
  241 EVLRLAFLSS GILEFFTSLS IALVAVYFGF SYLGELDFGH YDTGVTLAAG FLALILAPEF 300
  301 FQPLRDLGTF YHAKAQAVGA ADSLKTFMET PLAHPQRGEA ELASTDPVTI EAEELFITSP 360
  361 EGKTLAGPLN FTLPAGQRAV LVGRSGSGKS SLLNALSGFL SYQGSLRING IELRDLSPES 420
  421 WRKHLSWVGQ NPQLPAATLR DNVLLARPDA SEQELQAALD NAWVSEFLPL LPQGVDTPVG 480
  481 DQAARLSVGQ AQRVAVARAL LNPCSLLLLD EPAASLDAHS EQRVMEALNA ASLRQTTLMV 540
  541 THQLEDLADW DVIWVMQDGR IIEQGRYAEL SVAGGPFATL LAHRQEEI

Type	Start	End	Confidence
Cytoplasmic	1	23	0.93
Transmembrane Helix	24	45	0.89
Non-Cytoplasmic	46	60	0.88
Transmembrane Helix	61	80	0.95
Cytoplasmic	81	139	0.96
Transmembrane Helix	140	159	0.91
Non-Cytoplasmic	160	164	0.69
Transmembrane Helix	165	188	0.87
Cytoplasmic	189	244	0.97
Transmembrane Helix	245	268	0.91
Non-Cytoplasmic	269	277	0.84
Transmembrane Helix	278	301	0.78
Cytoplasmic	302	588	0.88