YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYDC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLPYLAL YKRHKWMLSL GIVLAIVTLL ASIGLLTLSG WFLSASAVAG VAGLYSFNYM  60
   61 LPAAGVRGAA ITRTAGRYFE RLVSHDATFR VLQHLRIYTF SKLLPLSPAG LARYRQGELL 120
  121 NRVVADVDTL DHLYLRVISP LVGAFVVIMV VTIGLSFLDF TLAFTLGGIM LLTLFLMPPL 180
  181 FYRAGKSTGQ NLTHLRGQYR QQLTAWLQGQ AELTIFGASD RYRTQLENTE IQWLEAQRRQ 240
  241 SELTALSQAI MLLIGALAVI LMLWMASGGV GGNAQPGALI ALFVFCALAA FEALAPVTGA 300
  301 FQHLGQVIAS AVRISDLTDQ KPEVTFPDTQ TRVADRVSLT LRDVQFTYPE QSQQALKGIS 360
  361 LQVNAGEHIA ILGRTGCGKS TLLQQLTRAW DPQQGEILLN DSPIASLNEA ALRQTISVVP 420
  421 QRVHLFSATL RDNLLLASPG SSDEALSEIL RRVGLEKLLE DAGLNSWLGE GGRQLSGGEL 480
  481 RRLAIARALL HDAPLVLLDE PTEGLDATTE SQILELLAEM MREKTVLMVT HRLRGLSRFQ 540
  541 QIIVMDNGQI IEQGTHAELL ARQGRYYQFK QGL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	38	0.89
Non-Cytoplasmic	39	44	0.58
Transmembrane Helix	45	71	0.74
Cytoplasmic	72	132	0.98
Transmembrane Helix	133	155	0.88
Non-Cytoplasmic	156	161	0.70
Transmembrane Helix	162	182	0.92
Cytoplasmic	183	244	0.96
Transmembrane Helix	245	266	0.92
Non-Cytoplasmic	267	277	0.75
Transmembrane Helix	278	300	0.88
Cytoplasmic	301	573	0.97