YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYDA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.88
Transmembrane Helix	20	42	0.88
Cytoplasmic	43	53	0.94
Transmembrane Helix	54	75	0.89
Non-Cytoplasmic	76	95	0.84
Transmembrane Helix	96	118	0.92
Cytoplasmic	119	126	0.93
Transmembrane Helix	127	147	0.94
Non-Cytoplasmic	148	184	0.94
Transmembrane Helix	185	208	0.88
Cytoplasmic	209	218	0.82
Transmembrane Helix	219	238	0.94
Non-Cytoplasmic	239	387	0.99
Transmembrane Helix	388	412	0.90
Cytoplasmic	413	420	0.97
Transmembrane Helix	421	444	0.87
Non-Cytoplasmic	445	470	0.92
Transmembrane Helix	471	493	0.89
Cytoplasmic	494	522	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIVELSRL QFALTAMYHF LFVPLTLGMA FLLAIMETVY VLSGKQIYKD MTKFWGKLFG  60
   61 INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEG LMAFFLESTF VGLFFFGWDR 120
  121 LGKVQHMCVT WLVALGSNLS ALWILVANGW MQNPIASDFN FETMRMEMVS FSELVLNPVA 180
  181 QVKFVHTVAS GYVTGAMFIL GISAWYMLKG RDFAFAKRSF AIAASFGMAA VLSVIVLGDE 240
  241 SGYEMGDVQK TKLAAIEAEW ETQPAPAAFT LFGIPDQEEE TNKFAIQIPY ALGIIATRSV 300
  301 DTPVIGLKEL MVQHEERIRN GMKAYSLLEQ LRSGSTDQAV RDQFNSMKKD LGYGLLLKRY 360
  361 TPNVADATEA QIQQATKDSI PRVAPLYFAF RIMVACGFLL LAIIALSFWS VIRNRIGEKK 420
  421 WLLRAALYGI PLPWIAVEAG WFVAEYGRQP WAIGEVLPTA VANSSLTAGD LIFSMVLICG 480
  481 LYTLFLVAEL FLMFKFARLG PSSLKTGRYH FEQSSTTTQP AR