YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYCA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	46	0.90
Non-Cytoplasmic	47	50	0.68
Transmembrane Helix	51	75	0.81
Cytoplasmic	76	104	0.86
Transmembrane Helix	105	126	0.81
Non-Cytoplasmic	127	135	0.77
Transmembrane Helix	136	154	0.96
Cytoplasmic	155	163	0.81
Transmembrane Helix	164	187	0.89
Non-Cytoplasmic	188	210	0.93
Transmembrane Helix	211	235	0.86
Cytoplasmic	236	253	0.91
Transmembrane Helix	254	275	0.89
Non-Cytoplasmic	276	285	0.83
Transmembrane Helix	286	311	0.77
Cytoplasmic	312	342	0.92
Transmembrane Helix	343	364	0.90
Non-Cytoplasmic	365	372	0.72
Transmembrane Helix	373	397	0.89
Cytoplasmic	398	413	0.96
Transmembrane Helix	414	435	0.91
Non-Cytoplasmic	436	441	0.88
Transmembrane Helix	442	461	0.95
Cytoplasmic	462	470	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDQVKVVAD DQAPAEQSLR RNLTNRHIQL IAIGGAIGTG LFMGSGKTIS LAGPSIIFVY  60
   61 MIIGFMLFFV MRAMGELLLS NLEYKSFSDF ASDLLGPWAG YFTGWTYWFC WVVTGMADVV 120
  121 AITAYAQFWF PDLSDWVASL AVIVLLLTLN LATVKMFGEM EFWFAMIKIV AIVSLIVVGL 180
  181 VMVAMHFQSP TGVEASFAHL WNDGGWFPKG LSGFFAGFQI AVFAFVGIEL VGTTAAETKD 240
  241 PEKSLPRAIN SIPIRIIMFY VFALIVIMSV TPWSSVVPEK SPFVELFVLV GLPAAASVIN 300
  301 FVVLTSAASS ANSGVFSTSR MLFGLAQEGV APKAFAKLSK RAVPAKGLTF SCICLLGGVV 360
  361 MLYVNPSVIG AFTMITTVSA ILFMFVWTII LCSYLVYRKQ RPHLHEKSIY KMPLGKLMCW 420
  421 VCMAFFVFVV VLLTLEDDTR QALLVTPLWF IALGLGWLFI GKKRAAELRK