YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156230687
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	182	0.98
Transmembrane Helix	183	202	0.89
Non-Cytoplasmic	203	208	0.72
Transmembrane Helix	209	230	0.76
Cytoplasmic	231	250	0.76
Transmembrane Helix	251	271	0.84
Non-Cytoplasmic	272	276	0.58
Transmembrane Helix	277	294	0.86
Cytoplasmic	295	301	0.76
Transmembrane Helix	302	323	0.88
Non-Cytoplasmic	324	330	0.76
Transmembrane Helix	331	351	0.89
Cytoplasmic	352	375	0.82
Transmembrane Helix	376	394	0.83
Non-Cytoplasmic	395	398	0.68
Transmembrane Helix	399	420	0.80
Cytoplasmic	421	430	0.79
Transmembrane Helix	431	449	0.53
Non-Cytoplasmic	450	470	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSQDGALLRV KGTQRLPVIS WKNMYRTSCS KLTGAWKCLQ LDGLVGSSVQ QKLFANALRS  60
   61 HMSARSLIQL CKKNQAEWIT FQHLCFLKRQ YVKSSSGLCQ RARPRQEPVS AVLDDRDDSM 120
  121 VRQVQQIPAL KPEPGTEVST CATESNQVEP EADRVARLEA RQWKEMRVQY SDLPGIYARL 180
  181 SKLKLTALVV TTAAAGFAMA PVPFDPVGFL MASLGTGLSS CTANSINQYF EVPFDSNMNR 240
  241 TKNRPLVRGQ ISPLHAVSFA LACGIPGVTL LTLGVNPLTG FLGSLNIFLY TCCYTPLKRL 300
  301 SIANTWVGAV VGAIPPVMGW TAATGSLDPG ALLLGAFLFS WQFPHFNALS WNLREDYSRG 360
  361 GYRMMSVTHP GLCKRVALRH SVGLIFLSAL GPVLDVTTWT FPLVSLPINL YISYLAFRFY 420
  421 RHGDRQNSRK LFFCSLWHLP MLLLLALTCK KSRVAQDEAA VTSSSASLAL