YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156230571
Protein type:	Transmembrane
Type Confidence:	0.45
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRSPSRSY SSSSLTGGIG SRGNLFGAIS ASAIGNLANT LRPQVQINSN TFTGADDKET  60
   61 MKGLNDRLAG YLSKVRLLEE SNNNLEEQIK EALLRKGADS GRDWSAYEKT IADLRNQIQE 120
  121 MTMDNARLFL QIDNARLAAD DFKVKFESEQ AMRQGVEQDL ARLRKMLDDT YMGRMQLEGQ 180
  181 IESMREELAF LKKSHEEDVA NLMSQINDSQ VNVQMENKNT ADLNDAINNI RQQYERAAQK 240
  241 SREDTEAWYK NKFDNITAEV TQNTEALQAG KSELNELRRQ KQSLEIDLQA LHNMIRSLEN 300
  301 SLHETEARYG QEVSGHNSRI MQLEAELGQL RAQVEQQAAD YEALLNLKSK LEAEIDTYHR 360
  361 LLEGVVDDKG DKDREEFSLE QALYAAPPPL PTTVGLKKAI IITQEIVDGE VVSQGFVMKS 420
  421 KSPVPH

Type	Start	End	Confidence
Cytoplasmic	1	17	0.42
Transmembrane Helix	18	34	0.41
Non-Cytoplasmic	35	426	0.99