YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157841250, gi...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHFTSISHR FHLLFIALCV LPGSLAQTSI PKGCGTNMDS LYFNLCDLSA VWGVVVEAFA  60
   61 AAGLVASLIL LIVLLASLPF INSKNWRSSF GLHTVFLIFT FGLFALTFAF IVGKNFATCA 120
  121 SRRFLFGVLF AGCFSCLLMQ AVRLNILARR NSGPRGWVWC LGALGLWLVE VVINTEWLII 180
  181 TIVRYPVNIT GTIAPVLAIP CNIANQDFVM ALIYVLNLLL AVVVASVPIM AGKHKQWRKD 240
  241 GALILVTGLL SVGIWVAWIV MYVSGNAKNG GPTWDDPTLA IALVSNAWVF LLLHTVPAVC 300
  301 SLSEEGEDEP VAEDMYPSRG YENMLKEQSA QNIFMENKAF SMDEPNAGNK PVSPYSGYNG 360
  361 QLRSCVYQPT ELAIITKGTG NQLESYDNVI PRASTGTPPR AQSGSTSPTT QLEDMRKIYT 420
  421 NGNFIRRPQ

Type	Start	End	Confidence
Cytoplasmic	1	10	0.48
Transmembrane Helix	11	27	0.52
Non-Cytoplasmic	28	57	0.85
Transmembrane Helix	58	81	0.89
Cytoplasmic	82	89	0.92
Transmembrane Helix	90	112	0.92
Non-Cytoplasmic	113	123	0.80
Transmembrane Helix	124	144	0.92
Cytoplasmic	145	155	0.84
Transmembrane Helix	156	180	0.84
Non-Cytoplasmic	181	209	0.90
Transmembrane Helix	210	231	0.93
Cytoplasmic	232	240	0.88
Transmembrane Helix	241	262	0.93
Non-Cytoplasmic	263	277	0.87
Transmembrane Helix	278	296	0.89
Cytoplasmic	297	429	0.92