YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156229841
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRAPGLLDSS SECKMTESSL RISGGAVRFG ATYGGNRLFS GARSGGGASS ALSRSLGLAR  60
   61 GGGLGLGFGA GAGAVAGAGA GLGLGGGSLA LGGGLGLGGG LGLGAGGARA AGVRAGVAHL 120
  121 RSHLGGRVFK IGGYGFNPSF ISSTTTVDAG VSPMPSIDPS LPSPDTVQVT RMKEKEELQA 180
  181 LNDKFASFID KARSLEQHNA VLRAKISMFT NPEQGGPANT SVLLTSAIGA YKSRIDSLSS 240
  241 TKEAIIAEIE HFKAIIEDDQ ARYEEETSQT KSLELDWTAL KEEVDNLYLT LFELQTSICG 300
  301 LEDQIALSKQ VYDAKVKEVR TIVTGGVKSA VSISVDNAAQ AQDLTSALTE VKAHYETLAQ 360
  361 RSKQEALVSV QDSLSMMSVS SQPSSQTLTS AKDELRAYKL QIDSVQREIE RLKSLNLQLE 420
  421 SQVEEAECHS NSHTETYQDQ VLTLKSQLDD LRKQITQYGQ EYQELLASKM SLDVEITAYK 480
  481 KLLDSEENRL KSGGGVTVHM SKTLLGGGAG GAGGLGAGAG GAGLGGGAGL GLGSGFGLGG 540
  541 GLGGGLGGGL GGGLGGGLGG GLGGGLGLGL GGGLGFGAGS SFGAGSSFMS SSLSSSGLSS 600
  601 TVY

Type	Start	End	Confidence
Cytoplasmic	1	60	0.94
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	88	0.72
Transmembrane Helix	89	113	0.85
Cytoplasmic	114	503	0.94
Transmembrane Helix	504	526	0.83
Non-Cytoplasmic	527	535	0.53
Transmembrane Helix	536	558	0.77
Cytoplasmic	559	563	0.47
Transmembrane Helix	564	589	0.79
Non-Cytoplasmic	590	603	0.75