YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CODB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	41	0.92
Non-Cytoplasmic	42	51	0.84
Transmembrane Helix	52	74	0.91
Cytoplasmic	75	94	0.84
Transmembrane Helix	95	118	0.88
Non-Cytoplasmic	119	125	0.78
Transmembrane Helix	126	147	0.86
Cytoplasmic	148	151	0.61
Transmembrane Helix	152	173	0.85
Non-Cytoplasmic	174	194	0.81
Transmembrane Helix	195	215	0.93
Cytoplasmic	216	224	0.82
Transmembrane Helix	225	249	0.89
Non-Cytoplasmic	250	257	0.84
Transmembrane Helix	258	279	0.91
Cytoplasmic	280	296	0.82
Transmembrane Helix	297	318	0.85
Non-Cytoplasmic	319	323	0.80
Transmembrane Helix	324	345	0.92
Cytoplasmic	346	358	0.80
Transmembrane Helix	359	377	0.91
Non-Cytoplasmic	378	381	0.66
Transmembrane Helix	382	402	0.81
Cytoplasmic	403	419	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDNNFSQG PVPQSARKGV LALTFVMLGL TFFSASMWTG GTLGTGLSYH DFFLAVLIGN  60
   61 LLLGIYTSFL GYIGAKTGLT THLLARFSFG VKGSWLPSLL LGGTQVGWFG VGVAMFAIPV 120
  121 GKATGLDINL LIAVSGLLMT VTVFFGISAL TVLSVIAVPA IACLGGYSVW LAVNGMGGLD 180
  181 ALKAVVPAQP LDFNVALALV VGSFISAGTL TADFVRFGRN AKLAVLVAMV AFFLGNSLMF 240
  241 IFGAAGAAAL GMADISDVMI AQGLLLPAIV VLGLNIWTTN DNALYASGLG FANITGMSSK 300
  301 TLSVINGIIG TVCALWLYNN FVGWLTFLSA AIPPVGGVII ADYLMNRRRY EHFATTRMMS 360
  361 VNWVAILAVA LGIAAGHWLP GIVPVNAVLG GALSYLILNP ILNRKTTAAM THVEANSVE