YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLFWAMLS FITRLPVPRR WSQGLDFEHY SRGIITFPLI GLLLGAISGL VFMVLQAWCG  60
   61 APLAALFSVL VLVLMTGGFH LDGLADTCDG VFSARSRDRM LEIMRDSRLG THGGLALIFV 120
  121 VLAKILVLSE LALRGESILA SLAAACAVSR GTAALLMYRH RYAREEGLGN VFIGKIDGRQ 180
  181 TCVTLGLAAI FAAVLLPGMH GVAAMVVTMV AIFILGQLLK RTLGGQTGDT LGAAIELGEL 240
  241 VFLLALL

Type	Start	End	Confidence
Cytoplasmic	1	32	0.89
Transmembrane Helix	33	55	0.88
Non-Cytoplasmic	56	62	0.61
Transmembrane Helix	63	84	0.86
Cytoplasmic	85	108	0.86
Transmembrane Helix	109	128	0.96
Non-Cytoplasmic	129	137	0.76
Transmembrane Helix	138	158	0.91
Cytoplasmic	159	177	0.84
Transmembrane Helix	178	196	0.79
Non-Cytoplasmic	197	199	0.50
Transmembrane Helix	200	219	0.81
Cytoplasmic	220	247	0.53