YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CITT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.16
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	26	0.95
Non-Cytoplasmic	27	33	0.74
Transmembrane Helix	34	50	0.70
Cytoplasmic	51	55	0.48
Transmembrane Helix	56	75	0.89
Non-Cytoplasmic	76	94	0.57
Transmembrane Helix	95	117	0.86
Cytoplasmic	118	137	0.49
Transmembrane Helix	138	158	0.77
Non-Cytoplasmic	159	159	0.42
Transmembrane Helix	160	174	0.16
Cytoplasmic	175	191	0.55
Transmembrane Helix	192	214	0.87
Non-Cytoplasmic	215	232	0.57
Transmembrane Helix	233	256	0.89
Cytoplasmic	257	287	0.59
Transmembrane Helix	288	304	0.72
Non-Cytoplasmic	305	309	0.54
Transmembrane Helix	310	329	0.89
Cytoplasmic	330	337	0.79
Transmembrane Helix	338	361	0.82
Non-Cytoplasmic	362	378	0.66
Transmembrane Helix	379	413	0.71
Cytoplasmic	414	423	0.40
Transmembrane Helix	424	449	0.81
Non-Cytoplasmic	450	462	0.42
Transmembrane Helix	463	484	0.93
Cytoplasmic	485	487	0.40

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAKDNIWK LLAPLVVMGV MFLIPVPDGM PPQAWHYFAV FVAMIVGMIL EPIPATAISF  60
   61 IAVTICVIGS NYLLFDAKEL ADPAFNAQKQ ALKWGLAGFS STTVWLVFGA FIFALGYEVS 120
  121 GLGRRIALFL VKFMGKRTLT LGYAIVIIDI LLAPFTPSNT ARTGGTVFPV IKNLPPLFKS 180
  181 FPNDPSARRI GGYLMWMMVI STSLSSSMFV TGAAPNVLGL EFVSKIAGIQ ISWLQWFLCF 240
  241 LPVGVILLII APWLSYVLYK PEITHSEEVA TWAGDELKTM GALTRREWTL IGLVLLSLGL 300
  301 WVFGSEVINA TAVGLLAVSL MLALHVVPWK DITRYNSAWN TLVNLATLVV MANGLTRSGF 360
  361 IDWFAGTMST HLEGFSPNAT VIVLVLVFYF AHYLFASLSA HTATMLPVIL AVGKGIPGVP 420
  421 MEQLCILLVL SIGIMGCLTP YATGPGVIIY GCGYVKSKDY WRLGAIFGVI YISMLLLVGW 480
  481 PILAMWN