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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17380406
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGQLQGGQA AGQQQQQQQA TQQQQHSKQQ QQQQQQQQQQ LQLKQHQQQQ QDILYQQHNE  60
   61 AIAIARGLQA ATPADIGDNQ PYYDTSGNVD WERAMGAGGA GAYGGIGIGS LPAAGGAAYH 120
  121 LGPANPAGLV SRHLDYGDGG HLAGPSAGLP AGAVGSGAGA GAGAGASVTG SGSGAGTGTG 180
  181 TGAGSGSGSG AAGKEVRYAP FPVASPTHSI PTTSQQIVGS VGGVGVGGAS SQSISGGVPT 240
  241 HSQSNTTGAL QRTHSRSMSS IPPPEPFMIA QSKAVNSRVS INVGGVRHEV LWRTLERLPH 300
  301 TRLGRLRECT THEAIVELCD DYSLADNEYF FDRHPKSFSS ILNFYRTGKL HIVDEMCVLA 360
  361 FSDDLEYWGV DELYLESCCQ HKYHQRKENV HEEMRKEAES LRQRDEEEFG EGKFSEYQKY 420
  421 LWELLEKPNT SFAARVIAVI SILFIVLSTI ALTLNTLPQL QHIDNGTPQD NPQLAMVEAV 480
  481 CITWFTLEYI LRFSASPDKW KFFKGGLNII DLLAILPYFV SLFLLETNKN ATDQFQDVRR 540
  541 VVQVFRIMRI LRVLKLARHS TGLQSLGFTL RNSYKELGLL MLFLAMGVLI FSSLAYFAEK 600
  601 DEKDTKFVSI PEAFWWAGIT MTTVGYGDIC PTTALGKVIG TVCCICGVLV VALPIPIIVN 660
  661 NFAEFYKNQM RREKALKRRE ALDRAKREGS IVSFHHINLK DAFAKSMDLI DVIVDTGKQT 720
  721 NVVHPKGKRQ STPNIGRQTL DVQSAPGHNL SQTDGNSTEG ESTSGRNPAT TGTGCYKNYD 780
  781 HVANLRNSNL HNRRGSSSEQ DAVPPYSFDN PNARQTSMMA MESYRREQQA LLQQQQQQQQ 840
  841 QMLQMQQIQQ KAPNGNGGAT GGGVANNLAM VAASSAATAV ATATNASNAS NTAPGSEGAE 900
  901 GGGDGDGGGV DDDNLSQAKG LPIQMMITPG EVAELRRQVA LENLQNQRMD NLEQDVPVEF 960
  961 ECCFCTTKGL PGCHGECIPL RANSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle