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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHS4_MAGGR
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPERPGAK ASYEQRNSYR KSPSRRNRPN DIEASGYYPV TGGQHQRGPS VNSFAETIRS  60
   61 PNSNIESAPL SPSAEQIEHG SDQPFQRKRS LIRPERNRID RDHPNYHYRK HAAKMNTLPS 120
  121 STGNDPVLED VSGATESGPP SGSNSASGSG VREENIPRKS RKASGRETVA EKSDNTRRRV 180
  181 STRNSKIVKE GKRKEKIPEQ LRPPSAWNVY CAVITFWSPD FIMKCCGMPA KAQRRAWREK 240
  241 IGLISLILII MGVVGFLTFG FNQAVCGGPV LRLHINSVDR SYMIFHGTAY NLDGSHHPVA 300
  301 EGIPKRLDGT GANVVYDLPE GYGGTDGSFM FQNVNGKCKG LITKAPNSDV PSEGDNLAWY 360
  361 FPCHARNQDG SSQPNMTYPY YFGYACHTTP LARSTFYTQL DKSADVYFTW ADIRNNSRNL 420
  421 FVYSGNVLDL DLLFWFNRDQ VNIPRRFEEL RDKNNAANRA IRGRDATRTF MASGDRQIAE 480
  481 CFEDIIKVGT VDTDTVGCIA AKVVLYVSLA LILSVVGARF TLALIFQWFI SKNYAADKTS 540
  541 QTSDNGKRNK QIEDWSEDIY RAPPRMPGDV GSSVAGASSS DHTSKRSSFL PTTSRFSTVY 600
  601 GAERSARNKS MPTTMASQAS GGYMGPSSTA YRETNESRTS FLKSDPYATN TAPIEGPGPS 660
  661 GFIHDSVVPQ PPSDWMPFGF PLAHTICLVT AYSEGELGLR TTLDSVAMTD YPNSHKVILV 720
  721 ICDGIIKGKG ESKSTPEYVL DMMKDHTIPV EDVEAFSYVA VASGSKRHNM AKIYAGFYDY 780
  781 GTQSNIPLDK QQRVPMMVVV KCGTPDEMVK SKPGNRGKRD SQIILMSFLQ KVMFDERMTE 840
  841 LEYEMFNGLW KVTGISPDFY EIVLMVDADT KVFPDSLTHM ISAMVKDPEI MGLCGETKIA 900
  901 NKRDSWVSAI QVFEYFISHH LAKSFESVFG GVTCLPGCFC MYRIKAPKGA QNYWVPILAN 960
  961 PDVVEHYSEN VVDTLHKKNL LLLGEDRYLT TLMLRTFPKR KQVFVPQAVC KTTVPDSFMV1020
 1021 LLSQRRRWIN STIHNLMELV LVRDLCGTFC FSMQFVIFIE LIGTLVLPAA IAFTFYVVII1080
 1081 SIINQPPQII PLVLLGLILG LPAILIIITA HSWSYVLWML IYLLSLPVWN FVLPAYAFWK1140
 1141 FDDFSWGDTR KTAGEKTKKA GIEYEGEFDS SKITMKRWAE FERDRRARRA STGARGKM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle