YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDR4_CANAX
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	516	0.75
Transmembrane Helix	517	539	0.89
Cytoplasmic	540	549	0.41
Transmembrane Helix	550	571	0.90
Non-Cytoplasmic	572	592	0.51
Transmembrane Helix	593	619	0.65
Cytoplasmic	620	627	0.54
Transmembrane Helix	628	648	0.93
Non-Cytoplasmic	649	658	0.53
Transmembrane Helix	659	680	0.89
Cytoplasmic	681	763	0.62
Transmembrane Helix	764	785	0.90
Non-Cytoplasmic	786	1182	0.64
Transmembrane Helix	1183	1203	0.74
Cytoplasmic	1204	1211	0.53
Transmembrane Helix	1212	1234	0.80
Non-Cytoplasmic	1235	1258	0.57
Transmembrane Helix	1259	1286	0.72
Cytoplasmic	1287	1302	0.54
Transmembrane Helix	1303	1325	0.91
Non-Cytoplasmic	1326	1332	0.52
Transmembrane Helix	1333	1353	0.93
Cytoplasmic	1354	1361	0.54
Transmembrane Helix	1362	1388	0.62
Non-Cytoplasmic	1389	1454	0.72
Transmembrane Helix	1455	1476	0.94
Cytoplasmic	1477	1490	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADADTSSNS SKTNEDRSQE GFGTYQGYTD RVASEVQELA RIISHASIQQ LKLKRQHSRQ  60
   61 ESQKSNEQES ELSGKLGVIP VDENGNFVDQ RLNPNSPEFN AAYWIQNAHK LVSSDIDYFK 120
  121 PVTIGVAYKN LRAYGSASDA DYQSTLVNLI PKYLSLFFRE YILRHTGPTF DILKPMDGLI 180
  181 KPGELTVVLG RPGAGCSTFL KTIASQTYGY HIDKDSVIRY NSLTPHEIKK HYRGEVVYCA 240
  241 ETENHFPQLT VGDTLEFAAK MRTPQNRPLG VSRDAYARHL AAVVMAVYGL SHTRNTKVGN 300
  301 DFIRGVSGGE RKRVSIAEIT LNNAMVQCWD NSTRGLDSAT ALEFIRALKA SADIVHTTPL 360
  361 VAIYQCSQDA YDLFDKVVLM YQGYQIYFGS AKKAKQYFID MGYECPQRQT TADFLTSLTN 420
  421 PAERIVRQGF EGKVPQTPQE FYEYWKKSPE GQQIVADVDQ YLTEHSSAAE KEAIKEAHQA 480
  481 RQSDHLKPAS PYTVSFFMQV RYIAHRNILR IKGNPSIHLF QIFGNIGMSF ILSSIFYNLP 540
  541 TATSSFYHRT AALFFAVLFN AFSCLLEIFS LYEARSIVEK HKKYALYHPA ADAFASIVTE 600
  601 LPTKFIIAIG FNLVYYFMVN FRRTPGNFFF YLLINFSATL AMSHIFRTIG AATKTLQEAM 660
  661 TPAAILLLAL TIFTGFVIPT PNMHGWCRWI NYLDPLAYAF ESLIANEFHN RDFECSQYVP 720
  721 SGGSYPTAGP NRICTPVGSV PGQDFVDGTR YMEMSFDYRN SHKWRNFGIV IGFIVFFFCT 780
  781 YILLCEINKG AMQKGEILLF QQRALKKRKK ANNDIESGEI EKVTPEFDNE YENNQDKMLQ 840
  841 SGGDTFFWRD LTYQVKIKSE DRVILDHVSG WVKPGQVTAL MGASGAGKTT LLNALSDRLT 900
  901 TGVVTEGIRL VNGRPLDSSF QRSIGYVQQQ DLHLETSTVR EALEFAAYLR QPKSVSRKEK 960
  961 NEYVDYIIRL LEMEQYADAV VGVSGEGLNV EQRKRLSIGV ELVAKPKLLV FLDEPTSGLD1020
 1021 SQTAWSICKL IRKLADNGQA ILCTIHQPSA ILLAEFDRLL FLQRGGQTVY FGDLGKNFTT1080
 1081 LINYFEKYGA PKCPPEANPA EWMLEVIGAA PGSKANQDYY DVWLKSSEFQ EMNSELDLMS1140
 1141 EELVKKPLDD DPDRLKPYAA PYWEQYLFVT KRVFEQNWRT PSYLYSKFLL VVTSSLFNGF1200
 1201 SFYKADRSLQ GLQNQMFSVF MFLVILHTLI QQYLPTFVSQ RDLYEVRERP SKTFSWITFI1260
 1261 AAQVTAEIPW NIICGTLGYF CWYYPVGLYQ NATYTNTVHQ RGAFMWFAIV LFFIYTSTLA1320
 1321 QLCISFLEID DNAANLSVLL FTMCLAFCGV LVTKEQLPGF WVFMYRCSPF TYLVSVMLSV1380
 1381 GLVDAPVTCA AKEYLRFSPP QGYTCMQYME PYMKVAGGYL LNENSTTECE FCTMKVTNVF1440
 1441 LKMIGSDYSK RGRDIGIYIA FIGINIIGTF ILYWFARVPK NFDIKLRRKR