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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CD44_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVWWHTAW GLLCLLQLSL AQQQIDLNIT CRYAGVFHVE KNGRYSISRT EAADLCEAFN  60
   61 TTLPTMAQME LALRKGFETC RYGFIEGHVV IPRIHPNAIC AANNTGVYIL LASNTSHYDT 120
  121 YCFNASAPLE EDCTSVTDLP NSFDGPVTIT IVNRDGTRYS KKGEYRTHQE DIDASNIIDE 180
  181 DVSSGSTIEK STPEGYILHT DLPTSQPTGD RDDAFFIGST LATIATTPWV SAHTKQNQER 240
  241 TQWNPIHSNP EVLLQTTTRM TDIDRNSTSA HGENWTQEPQ PPFNNHEYQD EEETPHATST 300
  301 TWADPNSTTE EAATQKEKWF ENEWQGKNPP TPSEDSHVTE GTTASAHNNH PSQRMTTQSQ 360
  361 EDVSWTDFFD PISHPMGQGH QTESKGHSSG NQDSGVTTTS GPARRPQIPE WLIILASLLA 420
  421 LALILAVCIA VNSRRRCGQK KKLVINSGNG TVEDRKPSEL NGEASKSQEM VHLVNKEPTE 480
  481 TPDQFMTADE TRNLQSVDMK IGV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle