YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCMC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKTLHQLAI PPRLYQICGW FIPWLAIASV VVLTVGWIWG FGFAPADYQQ GNSYRIIYLH  60
   61 VPAAIWSMGI YASMAVAAFI GLVWQMKMAN LAVAAMAPIG AVFTFIALVT GSAWGKPMWG 120
  121 TWWVWDARLT SELVLLFLYV GVIALWHAFD DRRLAGRAAG ILVLIGVVNL PIIHYSVEWW 180
  181 NTLHQGSTRM QQSIDPAMRS PLRWSIFGFL LLSATLTLMR MRNLILLMEK RRPWVSELIL 240
  241 KRGRK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	41	0.95
Non-Cytoplasmic	42	61	0.88
Transmembrane Helix	62	84	0.91
Cytoplasmic	85	90	0.86
Transmembrane Helix	91	114	0.88
Non-Cytoplasmic	115	128	0.86
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	157	0.76
Transmembrane Helix	158	177	0.92
Non-Cytoplasmic	178	203	0.93
Transmembrane Helix	204	224	0.91
Cytoplasmic	225	245	0.96