YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCMB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFWRIFRLE LRVAFRHSAE IANPLWFFLI VITLFPLSIG PEPQLLARIA PGIIWVAALL  60
   61 SSLLALERLF RDDLQDGSLE QLMLLPLPLP AVVLAKVMAH WMVTGLPLLI LSPLVAMLLG 120
  121 MDVYGWQVMA LTLLLGTPTL GFLGAPGVAL TVGLKRGGVL LSILVLPLTI PLLIFATAAM 180
  181 DAASMHLPVD GYLAILGALL AGTATLSPFA TAAALRISIQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	39	0.97
Non-Cytoplasmic	40	45	0.82
Transmembrane Helix	46	66	0.91
Cytoplasmic	67	96	0.79
Transmembrane Helix	97	119	0.72
Non-Cytoplasmic	120	127	0.73
Transmembrane Helix	128	150	0.89
Cytoplasmic	151	158	0.75
Transmembrane Helix	159	180	0.92
Non-Cytoplasmic	181	191	0.82
Transmembrane Helix	192	215	0.89
Cytoplasmic	216	220	0.84