YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAR1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLDGNPAN ETSLVLLLFA DFSSMLGCMA VLIGFWRLKL LRNHVTKVIA CFCATSFCKD  60
   61 FPSTILTLTN TAVNGGFPCY LYAIVITYGS FACWLWTLCL AISIYMLIVK REPEPERFEK 120
  121 YYYLLCWGLP LISTIVMLAK NTVQFVGNWC WIGVSFTGYR FGLFYGPFLF IWAISAVLVG 180
  181 LTSRYTYVVI HNGVSDNKEK HLTYQFKLIN YIIVFLVCWV FAVVNRIVNG LNMFPPALNI 240
  241 LHTYLSVSHG FWASVTFIYN NPLMWRYFGA KILTVFTFFG YFTDVQKKLE KNKNNNNPSP 300
  301 YSSSRGTSGK TMGGHPTGDD VQCSSDMEQC SLERHPNMVN NQQNLNNNYG LQQNYNDEGS 360
  361 SSSSLSSSDE EKQTVEMQNI QISTSTNGQG NN

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.86
Transmembrane Helix	14	36	0.91
Cytoplasmic	37	47	0.68
Transmembrane Helix	48	68	0.70
Non-Cytoplasmic	69	83	0.72
Transmembrane Helix	84	109	0.85
Cytoplasmic	110	120	0.96
Transmembrane Helix	121	143	0.88
Non-Cytoplasmic	144	162	0.91
Transmembrane Helix	163	187	0.84
Cytoplasmic	188	207	0.89
Transmembrane Helix	208	228	0.91
Non-Cytoplasmic	229	239	0.87
Transmembrane Helix	240	260	0.68
Cytoplasmic	261	392	0.74